Bioconductor Packages

Automated parameter selection for untargeted metabolomics data processing

Bayesian Analysis of Chip-chip experiment

Bayesian Analysis of Differential Expression in RNA Sequencing Data

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

Barcode Analysis using linear models

Meta-analysis for the metagenomic read counts data from different cohorts

BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)

BEAT - BS-Seq Epimutation Analysis Toolkit

Bayesian models for differential gene expression

Bayesian Hierarchical Clustering

BLMA: A package for bi-level meta-analysis

Model higher-order methylation profiles

Baffling Recursive Algorithm for Isotope distributioN calculations

Tools for the Efficient Analysis of High-Resolution Genomics Data

Forge your own BSgenome data package

Computational pipeline for computing probability of modification from structure probing experiment data

kallisto | bustools R utilities

Batch Effect Correction with Unknow Subtypes for scRNA-seq data

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

Bioconductor-Friendly Multithreaded BAM Processing

Spatial transcriptomic clustering

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Single-cell RNA-seq batch effects correction methods interface

Batch Effects Quality Control Software

Identify Batch-Biased Spatially Variable Genes

Swiss-army toolkit for selecting niche fronts and invasive margins in spatial transcriptomics data

Bayesian Analysis of ChIP-seq Data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Analysing Illumina BeadArray expression data using Bioconductor

Compression of Illumina BeadArray data

Illumina EPIC data on BeadSorted child saliva cells

Coordinate-Based Genomic Visualization Package for R

Datasets and test data files for the BentoBox package

Automatic RNA-Seq present/absent gene expression calls generation

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Bias-free Footprint Enrichment Test

Processing and analyzing bisulfite sequencing data

Biclustering Analysis and Results Exploration

Binding site defintion based on iCLIP data

Bioinformatics Genetic Algorithm (BioGA)

Routines for the functional analysis of biological networks

Biological Network Analysis

R-side access to BioPlex protein-protein interaction data

BioTIP: An R package for characterization of Biological Tipping-Point

Efficient manipulation of biological strings