Bioconductor Packages

basilisk and hail

View Bioconductor Package Maintainer Information Interactively

Bioconductor facilities for parallel evaluation

An interactive Shiny dashboard for Bioconductor package maintainers

Collection of simple tools for learning about Bioconductor Packages

interface to python sklearn via Rstudio reticulate

Set the appropriate version of Bioconductor packages

Efficient manipulation of biological strings

A matrix data storage object held in temporary files

Microarray Data related methods that utlize BufferedMatrix objects

Bumpy Matrix of Non-Scalar Objects

Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Cytometry dATa anALYSis Tools

Carbon Tetrachloride (CCl4) treated hepatocytes

Hub package for the precomputed data of CENTRE and example data

CGHbase: Base functions and classes for arrayCGH data analysis.

A Package for CLL Gene Expression Data

CNE Detection and Visualization

Identifies false positives of CNV calling tools by using SNV calls

Annotations for City of Hope CpG Island Analysis Pipeline

COexpression Tables ANalysis

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Package for CTDbase data query, visualization and downstream analysis

Data companion to CTexploreR

Explores Cancer Testis Genes

A mass spectrometry imaging toolbox for statistical analysis

Read and write mass spectrometry imaging files

Datasets and workflows for the Cardinal MSI

Construct Benchmarks for Single Cell Analysis Methods

Pre-processed data for use with the CellMapper package

Reconstruction, visualization and analysis of branching trajectories

Quantitative comparison of multiple ChIP-seq datasets

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Simulation of ChIP-seq experiments

R interface to a subset of OpenBabel functionalities

Cheminformatics Toolkit for R

Chimp and human brain data package

Infrastructure for Chromatographic Mass Spectrometry Data

Simulation of Tumor Clonal Evolution with Realistic Sequencing Noise

Data for the CluMSID package

An Investigation Across Different Species and Tissues

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

Create Copy-Number Plots using karyoploteR functionality

Tools for counting and visualising mutations in a target location

Queries the Human Cell Atlas

A GatingML Interface for Cross Platform Cytometry Data Sharing

DNA methylation-based machine learning models