Bioconductor Packages

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

Adaptive Dropout Imputer (ADImpute)

Agreement of Differential Expression Analysis

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Ancestry Specific Allele Frequency Estimation

Predict Acetylated Lysine Sites

Automatic Statistical Identification in Complex Spectra

Analysis of Alternative Splicing Using RNA-Seq

ATAC-seq Quality Control

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Attribute-Weighted Aggregation

visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Investigates Allele Specific Expression

Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Accessing AlphaMissense Data Resources in R

Automated spectraL Processing System for NMR

Statistical analysis of sequins

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Bayesian Analysis of Differential Expression in RNA Sequencing Data

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BEAT - BS-Seq Epimutation Analysis Toolkit

Model higher-order methylation profiles

Baffling Recursive Algorithm for Isotope distributioN calculations

Software infrastructure for efficient representation of full genomes and their SNPs

Arabidopsis lyrata full genome (JGI version V1.0)

Full genome sequences for Apis mellifera (BeeBase assembly4)

Full genome sequences for Apis mellifera (Amel_HAv3.1)

Full genome sequences for Apis mellifera (UCSC version apiMel2)

Full masked genome sequences for Apis mellifera (UCSC version apiMel2)

Asparagus officinalis (Garden asparagus) full genome (NCBI version Aspof.V1)

Full genome sequences for Arabidopsis thaliana (TAIR version from April 23, 2008)

Full genome sequences for Arabidopsis thaliana (TAIR9)

Full genome sequences for Bos taurus (UCSC version bosTau3)

Full masked genome sequences for Bos taurus (UCSC version bosTau3)

Full genome sequences for Bos taurus (UCSC version bosTau4)

Full masked genome sequences for Bos taurus (UCSC version bosTau4)

Full genome sequences for Bos taurus (UCSC version bosTau6)

Full masked genome sequences for Bos taurus (UCSC version bosTau6)

Full genome sequences for Bos taurus (UCSC version bosTau8)

Full genome sequences for Bos taurus (UCSC version bosTau9)

Full masked genome sequences for Bos taurus (UCSC version bosTau9)

Cicer arietinum (Chickpea) full genome (NCBI version ASM33114v1)

Full genome sequences for Caenorhabditis elegans (UCSC version ce10)