Bioconductor Packages

Gene expression enrichment in human brain regions

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

ADAM: Activity and Diversity Analysis Module

Activity and Diversity Analysis Module Graphical User Interface

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

CytoBands for AnnotationHub

EnsDbs for AnnotationHub

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

AnaLysis routines for ePigenomicS data

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Microbiome differential abudance and correlation analyses with bias correction

Analysis of alternative poly A site usage

A toolkit for APA analysis using RNA-seq data

Ancestry Specific Allele Frequency Estimation

ASCETIC

Automatic Statistical Identification in Complex Spectra

An R package for subset-based association analysis of heterogeneous traits and subtypes

Functional annotation-driven unsupervised clustering for single-cell data

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Analysis of Alternative Splicing Using RNA-Seq

ATAC-seq Quality Control

Transcription Factor Enrichment Analysis for ATAC-seq

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

A Functional Approach To Impute Genetically Regulated Expression

Affymetrix GeneChip software compatibility

Affymetrix Quality Assessment and Analysis Tool

Processing and Differential Expression Analysis of Agilent microRNA chips

Investigates Allele Specific Expression

Accessing AlphaMissense Data Resources in R

Automated spectraL Processing System for NMR

Create an ALTREP object by defining ALTREP functions in R

Bioconductor on the AnVIL compute environment

R / Bioconductor Support for the AnVIL Azure Platform

Generic functions for interacting with the AnVIL ecosystem

Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).

The GCP R Client for the AnVIL

Publish Packages and Other Resources to AnVIL Workspaces

Expose the vrs_anvil_toolkit Python package via R

Run workflows implemented in Terra/AnVIL workspace

A framework for sharing interactive data and plots from R through the web

Statistical analysis of sequins

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Manipulation of SQLite-based annotations in Bioconductor

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

geneChip Analysis Package