Bioconductor Packages

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

A set of annotation maps describing the entire Human Phenotype Ontology

Processed Harmonized TCGA Data of Five Selected Cancer Types

HiBED

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

HiTIMED

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

Data package for JASPAR databases

Data package for JASPAR 2018

Data package for JASPAR database (version 2020)

Data package for JASPAR database (version 2022)

Data package for JASPAR database (version 2024)

Example Junction Count data for use with JunctionSeq

Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

LegATo: Longitudinal mEtaGenomic Analysis Toolkit

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

LowMACAAnnotation

Reads from Two Lung Cancer Cell Lines

M3Drop Example Data

MAQC data subset for the Affymetrix platform

Example data for MEDIPS and QSEA packages

MIGSA vignette data

Sample Data for MMAPPR2

Example ChIP-Seq data for the MMDiff package

Data package for Multi-Omics Factor Analysis (MOFA)

A set of annotation maps describing the Mouse Phenotype Ontology

Data sets for the book 'Modern Statistics for Biology'

Datasets of published biological studies with DDA or SRM experiments

Supporting Data for the MTseeker Package

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Datasets for benchmarking in microbiome research

Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

Experimental Data for MutSeqR Examples

Nanopore RNA-Seq Example data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Data for NxtIRF

Supporting Data for the OmniAgeR Package

Orthology mapping package

Promoter Capture Hi-C data

Probe-level Expression Change Averaging

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Data package for phylogenetic profile analysis using PhyloProfile tool

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

test data for RIPSeeker

An ExperimentHub package for accessing processed RLSuite data sets