Bioconductor Packages

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

A set of annotation maps describing the entire Gene Ontology

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

GEO accession data GSE62944 as a SummarizedExperiment

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package

Reference data for GenomicDistributions package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

A set of annotation maps describing the entire Human Disease Ontology

T cell line infections with HIV-1 LAI (BRU)

A set of annotation maps describing the entire Human Phenotype Ontology

Processed Harmonized TCGA Data of Five Selected Cancer Types

HiBED

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

ITALICSData

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

Data package for JASPAR 2018

Data package for JASPAR database (version 2020)

Data package for JASPAR database (version 2022)

Data package for JASPAR database (version 2024)

Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

Disease Datasets from GEO

KEGG Disease Datasets from GEO

LINCS Knock-Out Data Package

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

LowMACAAnnotation

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

Reads from Two Lung Cancer Cell Lines

M3Drop Example Data

Experimental Data Package: MAQCsubset

Example data for MEDIPS and QSEA packages

Example ChIP-Seq data for the MMDiff package

A set of annotation maps describing the Mouse Phenotype Ontology

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Experimental Data for MutSeqR Examples

Data for the NCIgraph software package

Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package

Nanopore RNA-Seq Example data

Data required for getting the gene set scores with NetActivity package

expression and CGH data on breast cancer cell lines