Bioconductor Packages

Integrating Multi-modal Single Cell Experiment datasets

An example cancer whole genome sequencing data for the SomatiCA package

Somatic Cancer Alterations

The Cancer Genome Atlas Illumina 450k methylation example data

Experiment data for the TENET package

Transcriptome instability analysis

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Timer Quantification

A collection of trans-omics datasets across various biological systems

Data for the VariantTools tutorial

Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC).

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

EBI/PSB cross-hybridisation study package

Affymetrix Data for Demonstration Purpose

RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014

Normal colon and cancer preprocessed affy data for antiProfile building.

ARACNe-inferred gene networks from TCGA tumor datasets

Analysis of SUrvival and RIsk prediction in patients based on gene signatures

Human B-cell transcriptional interactome and normal human B-cell expression data

Data Package for Biscuiteer

Data for testing of the package blima.

Strand-seq data for demonstration purposes

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Example whole genome bisulfite data for the bsseq package

Connectivity Map (version 2) Data

ExperimentHub data for the cfTools package

cn.mops - Mixture of Poissons for CNV detection in NGS data

Data used in the vignette of the cnvGSA package

exprSet for Alon et al. (1999) colon cancer data

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Curated breast cancer gene expression data with survival and treatment information

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Cancer Dependency Map Data Package

Datasets for R Package dominatR

data and software for checking Dressman JCO 25(5) 2007

Example data for the dyebias package, which implements the GASSCO method.

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

The ewceData package provides reference data required for ewce

Genomic coordinates of problematic genomic regions

Illumina DASL example microarray data

exprSet for Karaman et al. (2003) fibroblasts data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.