Bioconductor Packages

BioC Workflow about publishing a Bioc Workflow

Genomic coordinates of CTCF binding sites, with orientation

Helper files for CopywriteR

GeoMx Digital Spatial Profiler (DSP) data analysis workflows

LymphoSeq annotation databases

Motif Identification and Validation

Probe-level Expression Change Averaging

Annotation data for the TENET package

Transcriptome instability analysis

Using Bioconductor for Microarray Analysis

Analysis of SUrvival and RIsk prediction in patients based on gene signatures

Decomposing Heterogeneous Cohorts using Omic Data Profiling

Genomic coordinates of problematic genomic regions

Genomic coordinates of problematic genomic regions

A plyranges and tximeta workflow

Global Test for Counts

Changing genomic coordinate systems with rtracklayer::liftOver

Linear Models for Microarray and Omics Data

Preprocessing tools for oligonucleotide arrays

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

L1-regularization based methods for detection of differential splicing

Rotation based gene set analysis

Seqpac: A Framework for smallRNA analysis in R using Sequence-Based Counts

Introduction to Bioconductor for Sequence Data

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Supervised Normalization of Microarrays

Performing a Spatial Analysis of Multiplexed Tissue Imaging Data

Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays