Bioconductor Packages

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

Adaptive Dropout Imputer (ADImpute)

Agreement of Differential Expression Analysis

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

A toolkit for APA analysis using RNA-seq data

Ancestry Specific Allele Frequency Estimation

Predict Acetylated Lysine Sites

Automatic Statistical Identification in Complex Spectra

Analysis of Alternative Splicing Using RNA-Seq

ATAC-seq Quality Control

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Attribute-Weighted Aggregation

visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics

Investigates Allele Specific Expression

Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Accessing AlphaMissense Data Resources in R

Automated spectraL Processing System for NMR

Bioconductor on the AnVIL compute environment

R / Bioconductor Support for the AnVIL Azure Platform

Generic functions for interacting with the AnVIL ecosystem

Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).

The GCP R Client for the AnVIL

Publish Packages and Other Resources to AnVIL Workspaces

Run workflows implemented in Terra/AnVIL workspace

Statistical analysis of sequins

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Bayesian Analysis of Differential Expression in RNA Sequencing Data

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BEAT - BS-Seq Epimutation Analysis Toolkit

Model higher-order methylation profiles

Baffling Recursive Algorithm for Isotope distributioN calculations

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

Computational pipeline for computing probability of modification from structure probing experiment data

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Basic peak calling on STARR-seq data

Batch Effects Quality Control Software

Identify Batch-Biased Spatially Variable Genes

Swiss-army toolkit for selecting niche fronts and invasive margins in spatial transcriptomics data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology