Bioconductor Packages

Efficient manipulation of biological strings

A matrix data storage object held in temporary files

Microarray Data related methods that utlize BufferedMatrix objects

Bumpy Matrix of Non-Scalar Objects

A step-by-step guide to analyzing CAGE data using R/Bioconductor

Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Cytometry dATa anALYSis Tools

CGHbase: Base functions and classes for arrayCGH data analysis.

CNE Detection and Visualization

Identifies false positives of CNV calling tools by using SNV calls

Annotations for City of Hope CpG Island Analysis Pipeline

COexpression Tables ANalysis

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Package for CTDbase data query, visualization and downstream analysis

Data companion to CTexploreR

Explores Cancer Testis Genes

A mass spectrometry imaging toolbox for statistical analysis

Read and write mass spectrometry imaging files

Construct Benchmarks for Single Cell Analysis Methods

Reconstruction, visualization and analysis of branching trajectories

Quantitative comparison of multiple ChIP-seq datasets

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Simulation of ChIP-seq experiments

R interface to a subset of OpenBabel functionalities

Cheminformatics Toolkit for R

Chimp and human brain data package

Infrastructure for Chromatographic Mass Spectrometry Data

Simulation of Tumor Clonal Evolution with Realistic Sequencing Noise

An Investigation Across Different Species and Tissues

Create Copy-Number Plots using karyoploteR functionality

Tools for counting and visualising mutations in a target location

Queries the Human Cell Atlas

A GatingML Interface for Cross Platform Cytometry Data Sharing

GUI's for visualization of flow cytometry data analysis pipelines

Tools for the Differential Analysis of Proteins Abundance with R

Tools for curating, analyzing, and manipulating biological sequences

A `DataFrame` (`S4Vectors`) backend for `dplyr`

Methylation array and sequencing spatial analysis methods

Differential Network Enrichment Analysis for Biological Data

DeeDeeExperiment: An S4 Class for managing and exploring omics analysis results

DegNorm: degradation normalization for RNA-seq data

A unified framework for working transparently with on-disk and in-memory array-like datasets

Delayed operation on DataFrame using standard DataFrame metaphor

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Delayed Arrays of Random Values

R package for sparse and out-of-core arithmetic and decomposition of Tensor

Interactive Workflow for Discovering Rhythmicity in Biological Data

Orchestrating Blood Radiation Transcriptomic Data