Bioconductor Packages

CytoBands for AnnotationHub

EnsDbs for AnnotationHub

Analysis of alternative poly A site usage

A toolkit for APA analysis using RNA-seq data

Automatic Statistical Identification in Complex Spectra

Affymetrix GeneChip software compatibility

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Investigates Allele Specific Expression

Automated spectraL Processing System for NMR

Create an ALTREP object by defining ALTREP functions in R

Bioconductor on the AnVIL compute environment

R / Bioconductor Support for the AnVIL Azure Platform

Generic functions for interacting with the AnVIL ecosystem

Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).

The GCP R Client for the AnVIL

Publish Packages and Other Resources to AnVIL Workspaces

Expose the vrs_anvil_toolkit Python package via R

Run workflows implemented in Terra/AnVIL workspace

A framework for sharing interactive data and plots from R through the web

100+ Curated Breast Cancer Gene Expression Data sets

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Gene Expression Atlas query and gene set enrichment package.

A babysitter's package for reproducible RNA-seq analysis

Tools for the Efficient Analysis of High-Resolution Genomics Data

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

Bioconductor-Friendly Multithreaded BAM Processing

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Comprehensive Collection of Curated Benchmarking Datasets and their Evaluation

Datasets and test data files for the BentoBox package

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Binding site defintion based on iCLIP data

Model-View-Controller (MVC) Classes That Use Biobase

Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions

Routines for the functional analysis of biological networks

R-side access to BioPlex protein-protein interaction data

Biobase: Base functions for Bioconductor

Read and write GFF and GTF files

Programmatic Access to the Azul API

Utility and internal functions for Bioconductor packages

Write, containerize, publish and version Quarto books with Bioconductor