mitoClone2
Bioc currentClonal Population Identification in Single-Cell RNA-Seq Data using Mitochondrial and Somatic Mutations
v1.18.0
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software
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GPL-3
Release Lineage
Entered 3.14 · Oct 27, 2021
Current · Requires R 4.6
1.0
In 10 of 49 releases
3.23
Description
This package primarily identifies variants in mitochondrial genomes from BAM alignment files. It filters these variants to remove RNA editing events then estimates their evolutionary relationship (i.e. their phylogenetic tree) and groups single cells into clones. It also visualizes the mutations and providing additional genomic context.
Code
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Topics
People
- Benjamin Story author maintainer
- Gregor Mönke author
- Lars Velten author