kimod
Bioc removedA k-tables approach to integrate multiple Omics-Data
Release Lineage
Entered 3.3 · May 4, 2016
Removed after 3.11 · Apr 28, 2020
Description
This package allows to work with mixed omics data (transcriptomics, proteomics, microarray-chips, rna-seq data), introducing the following improvements: distance options (for numeric and/or categorical variables) for each of the tables, bootstrap resampling techniques on the residuals matrices for all methods, that enable perform confidence ellipses for the projection of individuals, variables and biplot methodology to project variables (gene expression) on the compromise. Since the main purpose of the package is to use these techniques to omic data analysis, it includes an example data from four different microarray platforms (i.e.,Agilent, Affymetrix HGU 95, Affymetrix HGU 133 and Affymetrix HGU 133plus 2.0) on the NCI-60 cell lines.NCI60_4arrays is a list containing the NCI-60 microarray data with only few hundreds of genes randomly selected in each platform to keep the size of the package small. The data are the same that the package omicade4 used to implement the co-inertia analysis. The references in packages follow the style of the APA-6th norm.
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Code metrics have not been computed for this package yet.
Topics
People
Unknown
Cite
Cite this package
Start here. This is the citation for the package itself.
citation("kimod")Bioconductor packages have no CRAN DOI. The package landing page is https://bioconductor.org/packages/kimod.
This is the citation for the package. It is not a citation for the R Observatory.
Cite this page
Use this when the claim is about a measurement on this page.
BibTeX
@misc{robservatorykimod,
author = {Balamuta, James Joseph},
title = {{R} {Observatory}: Metrics for {kimod} version 1.16.0},
year = {2026},
publisher = {HJJB, LLC},
url = {https://r-observatory.thecoatlessprofessor.com/bioc/kimod},
note = {Data set. Data release v2026-08-05}
}APA
Balamuta, J. J. (2026). R Observatory: Metrics for kimod version 1.16.0 [Data set]. HJJB, LLC. Data release v2026-08-05. https://r-observatory.thecoatlessprofessor.com/bioc/kimodRIS
TY - DATA
AU - Balamuta, James Joseph
TI - R Observatory: Metrics for kimod version 1.16.0
PY - 2026
PB - HJJB, LLC
N1 - Data release v2026-08-05
UR - https://r-observatory.thecoatlessprofessor.com/bioc/kimod
ER - In prose
These package metrics were obtained from the R Observatory (Balamuta, 2026), data release v2026-08-05, https://r-observatory.thecoatlessprofessor.com/bioc/kimod.Bound to data release v2026-08-05, which is what makes the numbers on this page reproducible. See how to cite.