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immLynx

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Linking Advanced TCR Python Pipelines and Hugging Face Models in R

v1.0.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.23 · Apr 29, 2026

Current · Requires R 4.6

1.0 In 1 of 49 releases 3.23

Description

A comprehensive toolkit that bridges popular Python-based immune repertoire analysis tools and Hugging Face protein language models into the R environment. Provides unified interfaces for TCR distance calculations (tcrdist3), sequence generation probability (OLGA), selection inference (soNNia), clustering (clusTCR), protein embeddings (ESM-2), metaclone discovery (metaclonotypist). Fully compatible with the scRepertoire and immApex ecosystem for single-cell immune repertoire analysis.

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Topics

Software
Software › ResearchField › Immunology › ImmunoOncology
Software › Technology › SingleCell
Software › StatisticalMethod › Classification
Software › WorkflowStep › Annotation
Software › Technology › Sequencing
Software › BiologicalQuestion › MotifAnnotation
Software › StatisticalMethod › Clustering
Software › StatisticalMethod › DimensionReduction

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