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bamsignals

Bioc current

Extract read count signals from bam files

v1.44.1 · software · GPL-2
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Release Lineage

Entered 3.1 · Apr 17, 2015

Current · Requires R 4.6

1.0 In 23 of 49 releases 3.23

Description

This package allows to efficiently obtain count vectors from indexed bam files. It counts the number of reads in given genomic ranges and it computes reads profiles and coverage profiles. It also handles paired-end data.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure › DataImport
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Alignment

Depended on by (8)

Bioconductor (8)

crupR fourSynergy karyoploteR normr segmenter AneuFinder chromstaR Genefusiondiscover

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