Skip to content

Rvisdiff

Bioc current

Interactive Graphs for Differential Expression

v1.10.0 · software · GPL-2 | GPL-3

Release Lineage

Entered 3.18 · Oct 25, 2023

Current · Requires R 4.6

1.0 In 6 of 49 releases 3.23

Description

Creates a muti-graph web page which allows the interactive exploration of differential analysis tests. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

14 1 exported

Complexity

5.9 avg / 14 max

Call network

14 nodes / 24 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

2,963

Files

27

Compiled share

0%

Has compiled src

No

Language breakdown

R 424 (14.3%)Tests 61 (2.1%)Docs 88 (3%)Vignettes 2,390 (80.7%)

API

Exported functions

1

Internal functions

13

Testing & CI

Has tests

Yes

Test-to-code ratio

0.14

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.5.0

System requirements

C++ standard

License

GPL-2 | GPL-3

License flags

SPDX valid, OSI approved

History

Versions

6

First release

2023-10-24

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.18: 732 LOCv3.19: 744 LOCv3.20: 744 LOCv3.21: 744 LOCv3.22: 2,963 LOCv3.23: 2,963 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 64 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
100%
Return-value docs
100%
References docs
0%

Topics

People

Report a problem with this page →