RiboCrypt
Bioc currentInteractive visualization in genomics
Release Lineage
Entered 3.14 · Oct 27, 2021
Current · Requires R 4.6
Description
R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
267 9 exported
Complexity
2.9 avg / 30 max
Call network
267 nodes / 375 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,716
Files
199
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
258
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
2.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
10
First release
2021-10-26
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
26
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 85%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Michal Swirski author maintainer cph
- Kornel Labun contributor
- Haakon Tjeldnes author contributor