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KEGGgraph

Bioc current

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

v1.72.0 · software · GPL (>= 2)
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Release Lineage

Entered 2.4 · Apr 21, 2009

Current · Requires R 4.6

1.0 In 35 of 49 releases 3.23

Description

KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.

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Topics

Software › WorkflowStep › Pathways
Software › StatisticalMethod › GraphAndNetwork
Software › WorkflowStep › Visualization
Software › WorkflowStep › Pathways › KEGG

Depended on by (16)

Bioconductor (13)

clipper DEGraph EnrichmentBrowser GenomicRanges KEGGlincs lpNet MetaboSignal MWASTools NCIgraph pathview ROntoTools SPIA PFP

CRAN (3)

kangar00 maGUI rags2ridges

People

Jitao David Zhang