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InTAD

Bioc current

Search for correlation between epigenetic signals and gene expression in TADs

v1.32.0 · software · GPL (>=2)
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Release Lineage

Entered 3.7 · May 1, 2018

Current · Requires R 4.6

1.0 In 17 of 49 releases 3.23

Description

The package is focused on the detection of correlation between expressed genes and selected epigenomic signals (i.e. enhancers obtained from ChIP-seq data) either within topologically associated domains (TADs) or between chromatin contact loop anchors. Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.

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Code

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Topics

Software › ResearchField › Epigenetics
Software › Technology › Sequencing
Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing › RNASeq
Software › Technology › Sequencing › HiC
Software › AssayDomain › GeneExpression
Software › ResearchField › Immunology › ImmunoOncology

People

Konstantin Okonechnikov