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COHCAP

Bioc removed

CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data

v1.48.0 · GPL-3
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Release Lineage

Entered 2.14 · Apr 14, 2014

Removed after 3.18 · Oct 25, 2023

1.0 In 20 of 49 releases 3.23

Description

COHCAP (pronounced "co-cap") provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options. Discussion Group: https://sourceforge.net/p/cohcap/discussion/bioconductor/

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Topics

Software › AssayDomain › DNAMethylation
Software › Technology › Microarray
Software › Technology › Sequencing › MethylSeq
Software › ResearchField › Epigenetics
Software › BiologicalQuestion › DifferentialMethylation

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