tmbstan
MCMC Sampling from 'TMB' Model Object using 'Stan'
v1.0.91
·
Aug 26, 2023
·
GPL (>= 3)
Description
Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <DOI:10.1371/journal.pone.0197954>.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | ERROR |
| r-release-windows-x86_64 | OK |
Check details (16 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Kasper",
family = "Kristensen",
role = c("aut", "cre"),
email = "kaskr@dtu.dk")
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Kasper",
family = "Kristensen",
role = c("aut", "cre"),
email = "kaskr@dtu.dk")
as necessary.
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
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r-devel-windows-x86_64
*
NOTE
r-oldrel-macos-arm64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 46.8Mb
sub-directories of 1Mb or more:
libs 46.5Mb
NOTE
r-oldrel-macos-x86_64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 47.9Mb
sub-directories of 1Mb or more:
libs 47.6Mb
NOTE
r-oldrel-windows-x86_64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
ERROR
r-release-macos-x86_64
examples
Running examples in ‘tmbstan-Ex.R’ failed
The error most likely occurred in:
> ### Name: tmbstan
> ### Title: Draw MCMC samples from a TMB model object using Stan
> ### Aliases: tmbstan
>
> ### ** Examples
>
> TMB::runExample("simple")
Running example simple
> require(TMB)
Loading required package: TMB
> dyn.load(dynlib("simple"))
Error in dyn.load(dynlib("simple")) :
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so, 0x0006): tried: '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so' (not a mach-o file), '/System/Volumes/Preboot/Cryptexes/OS/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so' (no such file), '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so' (not a mach-o file)
Calls: <Anonymous> -> source -> withVisible -> eval -> eval -> dyn.load
Execution halted
OK
r-release-windows-x86_64
*
Check History
ERROR 8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Kasper",
family = "Kristensen",
role = c("aut", "cre"),
email = "kaskr@dtu.dk")
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Kasper",
family = "Kristensen",
role = c("aut", "cre"),
email = "kaskr@dtu.dk")
as necessary.
ERROR
r-release-macos-x86_64
examples
Running examples in ‘tmbstan-Ex.R’ failed
The error most likely occurred in:
> ### Name: tmbstan
> ### Title: Draw MCMC samples from a TMB model object using Stan
> ### Aliases: tmbstan
>
> ### ** Examples
>
> TMB::runExample("simple")
Running example simple
> require(TMB)
Loading required package: TMB
> dyn.load(dynlib("simple"))
Error in dyn.load(dynlib("simple")) :
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so':
dlopen(/Volume
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 46.8Mb
sub-directories of 1Mb or more:
libs 46.5Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 47.9Mb
sub-directories of 1Mb or more:
libs 47.6Mb
NOTE
r-oldrel-windows-x86_64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
Reverse Dependencies (4)
Dependency Network
Version History
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1.0.91
Mar 9, 2026