tapnet

0.6

Trait Matching and Abundance for Predicting Bipartite Networks

0packages depend

2.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Carsten DormannFirst published 2021-01-282 releasesCRAN page ↗GitHub ↗

Functions to produce, fit and predict from bipartite networks with abundance, trait and phylogenetic information. Its methods are described in detail in Benadi, G., Dormann, C.F., Fruend, J., Stephan, R. & Vazquez, D.P. (2021) Quantitative prediction of interactions in bipartite networks based on traits, abundances, and phylogeny. The American Naturalist, in press.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("tapnet", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("biometry/tapnet")

Development version from biometry/tapnet. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tapnet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-tapnet

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-tapnet

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.4 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 57%
Documented parameters: 100%
Return-value docs: 100%
References docs: 90%

Downloads

2.2K

CRAN downloads in the past year

Rank #21,039 · ~6/day · ~184/mo

Releases R versions

Daily download trend is not available in this view yet.

17230 days

54590 days

2.2K1 year

Compare downloads with other packages →

Also on108 r2u37 autocran

Repository

GitHub ↗ biometry/tapnet

2Stars

1Forks

0Open issues

0Open PRs

0Releases

38Commits

1Contributors

License GPL-3.0 · 38 commits · Last activity 2026-01-20 · 0% stars, 30d

Stars over time

2023-03-28 · 12026-07-07 · 2

Repository practices

Upstream repositoryBeta

Checks run against github.com/biometry/tapnet on 2026-07-30.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (8)

ape bipartite MPSEMmethodsphytoolsstatsutilsvegan

LinkingTo (0)

none

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Carsten Dormann

Author, Maintainer

Authors (2)

Carsten Dormann

Author, Maintainer

Gita Benadi

Author

Contributors (2)

Jochen Fruend

Contributor

Ruth Stephan

Contributor

Other (1)

Boris Tinoco

Data contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.6Latest
2026-01-20 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.3
2021-01-28
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-01-28
Total releases: 2 / 5 yrs
License: GPL
Minimum R: ≥ 3.5.0
Bundled data: 3.1 KB / 1 file
Download size: 367 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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