prabclus
Functions for Clustering and Testing of Presence-Absence, Abundance and Multilocus Genetic Data
Description
Distance-based parametric bootstrap tests for clustering with spatial neighborhood information. Some distance measures, Clustering of presence-absence, abundance and multilocus genetic data for species delimitation, nearest neighbor based noise detection. Genetic distances between communities. Tests whether various distance-based regressions are equal. Try package?prabclus for on overview.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
tests
Running ‘donttestexamples.R’ Running ‘prabclustests.R’ [18s/24s] Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ... 108,110c108 < Simulation run 1OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead. < OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). < statistics value= 0.5818 --- > Simulation run 1 statistics value= 0.5818
Check History
NOTE 11 OK · 1 NOTE · 0 WARNING · 0 ERROR · 1 FAILURE Jun 8, 2026
contents of ‘data’ directory
tests
Running ‘donttestexamples.R’ Running ‘prabclustests.R’ [18s/24s] Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ... 108,110c108 < Simulation run 1OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead. < OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). < statistics value= 0.5818 --- > Simulation run 1 statistics value= 0.5818
WARNING 11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE Jun 7, 2026
Rd files
cannot open the connection cannot open the connection cannot open the connection problems found in ‘build.charmatrix.Rd’, ‘build.ext.nblist.Rd’, ‘build.nblist.Rd’
tests
Running ‘donttestexamples.R’ Running ‘prabclustests.R’ [18s/24s] Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ... 108,110c108 < Simulation run 1OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead. < OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). < statistics value= 0.5818 --- > Simulation run 1 statistics value= 0.5818
NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
tests
Running ‘donttestexamples.R’ Running ‘prabclustests.R’ [17s/51s] Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ... 108,110c108 < Simulation run 1OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead. < OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). < statistics value= 0.5818 --- > Simulation run 1 statistics value= 0.5818