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polymapR

Linkage Analysis in Outcrossing Polyploids

v1.1.7 · Oct 17, 2025 · GPL

Description

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0, both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>.

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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is 13.4Mb
  sub-directories of 1Mb or more:
    R      7.1Mb
    data   5.2Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 13.2Mb
  sub-directories of 1Mb or more:
    R      7.1Mb
    data   5.0Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is 11.8Mb
  sub-directories of 1Mb or more:
    R      6.3Mb
    data   4.3Mb
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 13.4Mb
  sub-directories of 1Mb or more:
    R      7.1Mb
    data   5.2Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 13.2Mb
  sub-directories of 1Mb or more:
    R      7.1Mb
    data   5.0Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is 11.8Mb
  sub-directories of 1Mb or more:
    R      6.3Mb
    data   4.3Mb

Reverse Dependencies (3)

Dependency Network

Dependencies Reverse dependencies doParallel foreach igraph knitr MDSMap mappoly polyqtlR segtest polymapR

Version History

new 1.1.7 Mar 9, 2026