pamr

1.57

Pam: Prediction Analysis for Microarrays

6packages depend

198.5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Balasubramanian NarasimhanFirst published 2003-05-2128 releasesCRAN page ↗

Some functions for sample classification in microarrays.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pamr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pamr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pamr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pamr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 6 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 30%
References docs: 12%

Downloads

198.5K

CRAN downloads in the past year

Rank #1,085 · ~544/day · ~16.5K/mo

Releases R versions

Daily download trend is not available in this view yet.

9.8K30 days

38.3K90 days

198.5K1 year

Compare downloads with other packages →

Also on677 r2u38 autocran6.1K conda_forge185 bioconda71 c2d4u

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (2)

clustersurvival

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

6direct

0indirect

c060 iC10 nlcv stylo caret mlr

Code & Tests

Code Composition

R 2,938 (68%)Rd 1,379 (32%)

Code characteristics

Cyclomatic complexity: 3.0 median / 22 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

62 24 exported

Complexity

4.5 avg / 22 max

Call network

62 nodes / 47 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
khan	data.frame	2,308 × 65	–

People & History

People (4)

Maintainer (1)

Balasubramanian Narasimhan

Author, Maintainer

Authors (4)

Balasubramanian Narasimhan

Author, Maintainer

Gilbert Chu

Author · added in 1.57

Trevor Hastie

Author · added in 1.57

Rob Tibshirani

Author · added in 1.57

Listed in earlier versions (3)

Gil Chu

no longer listed · 1.12 to 1.56.2.1

T. Hastie

no longer listed · 1.12 to 1.56.2.1

R. Tibshirani

no longer listed · 1.12 to 1.56.2.1

Package Timeline

28 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.57Latest
2024-07-01 · current release · diff ↗
unarchivedReturned to CRAN
2024-07-01
1.56.2.1
2024-06-27 · diff ↗
orphanedOrphaned by its maintainer
2024-06-27
Deleted Fortran constructs not corrected by maintainer
R
R 4.4.0 released · 2024-04-24
1.56.2
2024-04-20 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.56.1
2019-04-22 · diff ↗
1.56
2019-02-01 · diff ↗
R
R 3.5.0 released · 2018-04-23

Show 47 earlier events

R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
1.55
2014-08-27 · diff ↗
R
R 3.1.0 released · 2014-04-10
1.54.1
2013-07-24 · diff ↗
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
1.54
2011-12-01 · diff ↗
R
R 2.14.0 released · 2011-10-31
1.53
2011-10-27 · diff ↗
R
R 2.13.0 released · 2011-04-13
1.51
2011-04-11 · diff ↗
1.50
2010-12-09 · diff ↗
1.48.0
2010-10-26 · diff ↗
R
R 2.12.0 released · 2010-10-15
1.47
2010-07-03 · diff ↗
1.46.0
2010-05-01 · diff ↗
R
R 2.11.0 released · 2010-04-22
1.44.0
2009-11-13 · diff ↗
R
R 2.10.0 released · 2009-10-26
1.42.0
2009-05-10 · diff ↗
R
R 2.9.0 released · 2009-04-17
1.33
2009-04-15 · diff ↗
1.31
2009-02-19 · diff ↗
R
R 2.8.0 released · 2008-10-20
R
R 2.7.0 released · 2008-04-22
R
R 2.6.0 released · 2007-10-03
R
R 2.5.0 released · 2007-04-24
1.29
2007-04-19 · diff ↗
R
R 2.4.0 released · 2006-10-03
R
R 2.3.0 released · 2006-04-24
1.28
2006-03-31 · diff ↗
R
R 2.2.0 released · 2005-10-06
1.27
2005-09-22 · diff ↗
1.25
2005-08-22 · diff ↗
R
R 2.1.0 released · 2005-04-18
1.24
2004-11-17 · diff ↗
1.23
2004-11-11 · diff ↗
1.22
2004-10-20 · diff ↗
R
R 2.0.0 released · 2004-10-04
1.21
2004-09-16 · diff ↗
R
R 1.9.0 released · 2004-04-12
1.12.1
2003-10-11 · diff ↗
R
R 1.8.0 released · 2003-10-08
1.12
2003-05-21
R
R 1.7.0 released · 2003-04-16

Package metadata

First published: 2003-05-21
Total releases: 28 / 23 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5
Bundled data: 473 KB / 1 file
Download size: 517 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Machine Learning & Statistical Learning Survival Analysis

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