Description
Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (16 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Gregory Warnes <greg@warnes.net>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Gregory",
family = "Warnes",
role = c("aut", "cre"),
email = "greg@warnes.net"),
person(given = c("with", "contributions", "from", "Gregor"),
family = "Gorjanc",
role = "aut"),
person(given = "Friedrich",
family = "Leisch",
role = "aut"),
person(given = "Michael",
family = "Man.",
role = "aut"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
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NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Gregory Warnes <greg@warnes.net>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Gregory",
family = "Warnes",
role = c("aut", "cre"),
email = "greg@warnes.net"),
person(given = c("with", "contributions", "from", "Gregor"),
family = "Gorjanc",
role = "aut"),
person(given = "Friedrich",
family = "Leisch",
role = "aut"),
person(given = "Michael",
family = "Man.",
role = "aut"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
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checkRd: (-1) diseq.Rd:78-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:93-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:95-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:97-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:124: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:125: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:126-128: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:86-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:48-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:59-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:78-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:93-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:95-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:97-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:124: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:125: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:126-128: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Gregory Warnes <greg@warnes.net>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Gregory",
family = "Warnes",
role = c("aut", "cre"),
email = "greg@warnes.net"),
person(given = c("with", "contributions", "from", "Gregor"),
family = "Gorjanc",
role = "aut"),
person(given = "Friedrich",
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Gregory Warnes <greg@warnes.net>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Gregory",
family = "Warnes",
role = c("aut", "cre"),
email = "greg@warnes.net"),
person(given = c("with", "contributions", "from", "Gregor"),
family = "Gorjanc",
role = "aut"),
person(given = "Friedrich",
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (
Reverse Dependencies (3)
imports
suggests
Dependency Network
Version History
new
1.3.8.1.3
Mar 10, 2026