genepop

1.2.17

Population Genetic Data Analysis Using Genepop

0packages depend

10.4Kdownloads / year

4.3%test coverage

13/13checks pass

Overview

About

Maintained by François RoussetFirst published 2017-06-1410 releasesCRAN page ↗

Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("genepop", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genepop

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-genepop

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.7 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.19

4.3%

Coverage · measured lines

Dependencies · direct

Check history

OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-09
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 3 earlier snapshots

NOTE2026-04-10
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 92%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 5%

Downloads

10.4K

CRAN downloads in the past year

Rank #4,069 · ~28/day · ~863/mo

Releases R versions

Daily download trend is not available in this view yet.

60630 days

2.3K90 days

10.4K1 year

Compare downloads with other packages →

Also on573 r2u32 autocran

Repository

Repository ↗ francois/genepop

Repository practices

Upstream repositoryBeta

Repository gitlab.mbb.univ-montp2.fr/francois/genepop is linked, but repository-practices checks have not run for it yet. Checks are GitHub-only for now.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (2)

Rcpp stringr

LinkingTo (2)

Rcpp RcppProgress

Suggests (3)

testthat knitr shiny

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

François Rousset

Author, Maintainer, Copyright holder

Authors (1)

François Rousset

Author, Maintainer, Copyright holder

Contributors (3)

Khalid Belkhir

Contributor

Alexandre Genin

Contributor · added in 1.2.2

Jimmy Lopez

Contributor

François Rousset

Author, Maintainer, Copyright holder

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

1.2.17Latest
2026-07-09 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.2.14
2026-01-23 · diff ↗
1.2.11
2025-08-27 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.2.2
2023-01-20 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.1.7
2020-02-23 · diff ↗
1.1.4
2019-12-07 · diff ↗
1.1.3
2019-08-22 · diff ↗
1.1.2
2019-06-23 · diff ↗
R
R 3.6.0 released · 2019-04-26

Show 4 earlier events

R
R 3.5.0 released · 2018-04-23
1.0.5
2017-08-23 · diff ↗
1.0
2017-06-14
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-06-14
Total releases: 10 / 9 yrs
License: CeCILL-2
Download size: 1.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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