gaston

Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models

v1.6 · Dec 7, 2023 · GPL-3

Description

Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al <doi:10.1159/000488519>.

Downloads

10.3K

Last 30 days

1207th

10.3K

Last 90 days

10.3K

Last year

CRAN Check Status

3 NOTE

11 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	642.3s
r-devel-linux-x86_64-debian-gcc	OK	549.2s
r-devel-linux-x86_64-fedora-clang	OK	859.4s
r-devel-linux-x86_64-fedora-gcc	OK	1343s
r-devel-macos-arm64	OK	56s
r-devel-windows-x86_64	OK	789s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	132s
r-oldrel-windows-x86_64	NOTE	906s
r-patched-linux-x86_64	OK	724.4s
r-release-linux-x86_64	OK	706s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	266s
r-release-windows-x86_64	OK	757s

Check details (14 non-OK)

OK r-devel-linux-x86_64-debian-clang

OK r-devel-linux-x86_64-debian-gcc

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

NOTE r-oldrel-macos-arm64

installed package size

  installed size is 96.4Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs     92.8Mb

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 84.3Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs     80.7Mb

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  6.5Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs      2.9Mb

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-oldrel-macos-arm64

installed package size

  installed size is 96.4Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs     92.8Mb

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 84.3Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs     80.7Mb

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  6.5Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs      2.9Mb

Reverse Dependencies (8)

depends

Ravages milorGWAS

imports

RAINBOWR hierfstat rNeighborGWAS rNeighborQTL snpsettest

linking_to

Ravages milorGWAS

suggests

bigsnpr

Dependency Network

Version History

new 1.6 Mar 9, 2026