Ravages

1.2.0

Rare Variant Analysis and Genetic Simulations

0packages depend

8.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Ozvan BocherFirst published 2020-11-1112 releasesCRAN page ↗

Rare variant association tests: burden tests (Bocher et al. 2019 doi:10.1002/gepi.22210) and the Sequence Kernel Association Test (Bocher et al. 2021 doi:10.1038/s41431-020-00792-8) in the whole genome using the RAVA-FIRST approach (Bocher et al. 2022 doi:10.1371/journal.pgen.1009923). Ravages also enables to perform genetic simulations (Bocher et al. 2023 doi:10.1002/gepi.22529).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("Ravages", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ravages

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-Ravages

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 10.4 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 74%
Documented parameters: 100%
Return-value docs: 100%
References docs: 35%

Downloads

8.3K

CRAN downloads in the past year

Rank #12,205 · ~23/day · ~695/mo

Releases R versions

Daily download trend is not available in this view yet.

26630 days

87490 days

8.3K1 year

Compare downloads with other packages →

Also on460 r2u

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (6)

R >= 3.5.0Rcpp RcppParallelmethodsgaston mlogit (>= 1.1-0)

Imports (6)

Formula dfidxparallelbedr curl data.table

LinkingTo (5)

Rcpp RcppParallel RcppEigen gaston BH

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Ozvan Bocher

Author, Maintainer

Authors (3)

Ozvan Bocher

Author, Maintainer

Gaelle Marenne

Author · added in 1.2.0

Hervé Perdry

Author

Package Timeline

12 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.2.0Latest
2026-02-27 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1.3
2023-03-28 · diff ↗
1.1.2
2023-02-01 · diff ↗
1.1.1
2022-11-11 · diff ↗
1.1.0
2022-06-01 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.0
2021-10-19 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.1.5
2021-05-13 · diff ↗
0.1.4
2021-05-08 · diff ↗
0.1.3
2021-04-08 · diff ↗
0.1.2
2021-03-16 · diff ↗

Show 3 earlier events

0.1.1
2020-11-23 · diff ↗
0.1
2020-11-11
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-11-11
Total releases: 12 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 4.4 MB / 6 files
Download size: 4.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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