SerolyzeR

1.4.1

Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

0packages depend

2.8Kdownloads / year

94.0%test coverage

12/13checks pass

Overview

About

Maintained by Jakub GrzywaczewskiFirst published 2025-03-077 releasesCRAN page ↗GitHub ↗

Speeds up the process of loading raw data from MBA (Multiplex Bead Assay) examinations, performs quality control checks, and automatically normalises the data, preparing it for more advanced, downstream tasks. The main objective of the package is to create a simple environment for a user, who does not necessarily have experience with R language. The package is developed within the project 'PvSTATEM', which is an international project aiming for malaria elimination.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SerolyzeR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mini-pw/SerolyzeR")

Development version from mini-pw/SerolyzeR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-serolyzer

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SerolyzeR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SerolyzeR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 8.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.36

94.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 474 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 91%
References docs: 3%

Downloads

2.8K

CRAN downloads in the past year

Rank #19,012 · ~8/day · ~232/mo

Releases R versions

Daily download trend is not available in this view yet.

13530 days

58290 days

2.8K1 year

Compare downloads with other packages →

Also on174 r2u3 autocran

Repository

GitHub ↗ mini-pw/serolyzer

10Stars

2Forks

8Open issues

0Open PRs

7Releases

199Commits

5Contributors

199 commits · Last activity 2026-04-26 · +11.1% stars, 30d

Stars over time

2025-05-30 · 92026-07-07 · 9

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/mini-pw/serolyzer on 2026-07-31.

Continuous integration (1)

GitHub Actions

Automation and maintenance (1)

pre-commit

Lint, format, editor (1)

RStudio project

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

24 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (19)

dplyr ggplot2 nplr R6 readxl stringi stringrgridpngtoolsggrepel lubridate R.utils svglite fs scales rlang patchwork cellranger

LinkingTo (0)

none

Suggests (7)

knitr qpdf furrr future qs2 rmarkdown testthat (>= 3.0.0)

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Jakub Grzywaczewski

Author, Maintainer

Authors (3)

Jakub Grzywaczewski

Author, Maintainer

Tymoteusz Kwiecinski

Author

Mateusz Nizwantowski

Author

Other (2)

Przemyslaw Biecek

Thesis advisor

Nuno Sepulveda

Thesis advisor

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.4.1Latest
2026-02-20 · current release · diff ↗
1.4.0
2026-01-21 · diff ↗
1.3.1
2025-10-21 · diff ↗
1.3.0
2025-07-18 · diff ↗
1.2.0
2025-05-06 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.1.0
2025-03-20 · diff ↗
1.0.0
2025-03-07
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-03-07
Total releases: 7 / 1 yrs
License: BSD_3_clause + file LICENSE OSI
Download size: 1.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →