ReviewR

2.3.10

A Light-Weight, Portable Tool for Reviewing Individual Patient Records

0packages depend

3Kdownloads / year

1.0%test coverage

13/13checks pass

Overview

About

Maintained by David MayerFirst published 2021-04-024 releasesCRAN page ↗GitHub ↗

A portable Shiny tool to explore patient-level electronic health record data and perform chart review in a single integrated framework. This tool supports browsing clinical data in many different formats including multiple versions of the 'OMOP' common data model as well as the 'MIMIC-III' data model. In addition, chart review information is captured and stored securely via the Shiny interface in a 'REDCap' (Research Electronic Data Capture) project using the 'REDCap' API. See the 'ReviewR' website for additional information, documentation, and examples.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("ReviewR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("thewileylab/ReviewR")

Development version from thewileylab/ReviewR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-reviewr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ReviewR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 4.0 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.01

1.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-14
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-16
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,246 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: not tracked
Return-value docs: 100%
References docs: 0%

Downloads

CRAN downloads in the past year

Rank #12,787 · ~8/day · ~251/mo

Releases R versions

Daily download trend is not available in this view yet.

26730 days

83990 days

3K1 year

Compare downloads with other packages →

Also on134 r2u

Repository

GitHub ↗ thewileylab/reviewr

25Stars

14Forks

8Open issues

0Open PRs

9Releases

1,090Commits

8Contributors

1,090 commits · Last activity 2023-09-01 · 0% stars, 30d

Stars over time

2024-10-04 · 232026-07-07 · 25

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/thewileylab/reviewr on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (2)

data-raw/Dockerfile

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

41 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

LinkingTo (0)

none

Suggests (13)

fs gt here htmltools knitr pkgload processx readr rmarkdown rstudioapi spelling testthat usethis

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 5,646 (67%)Rd 1,526 (18%)Vignettes 1,277 (15%)

Code characteristics

Cyclomatic complexity: 1.0 median / 53 max
Test cases: 3 / 0.01 per code line

Test coverage

Line coverage

Expression

0.4%

Tests / Examples

1.0% / 0% ex

Functions

91 1 exported

Complexity

2.9 avg / 53 max

Call network

91 nodes / 130 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

91 functions

Function	Cyclo	Coverage
run_app exp	1	0%
abstraction_instrument_ui	1	0%
abstraction_setup_server	2	0%
abstraction_setup_ui	1	0%
all_patient_search_dt	1	0%
app_server	1	0%

Datasets

Bundled datasets · 5

Name	Class	Rows × Cols	Also ships in
db_function_all_patients_table_template	vector	–	–
db_function_subject_table_template	vector	–	–
db_module_template	vector	–	–
redcap_survey_complete	tbl_df/tbl/data.frame	3 × 2	–
redcap_widget_map	tbl_df/tbl/data.frame	9 × 3	–

People & History

People (4)

Maintainer (1)

David Mayer

Maintainer, Author

Authors (3)

Maintainer, Author

Author

Author

Funders (1)

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.3.10Latest
2023-09-01 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
2.3.8
2022-05-18 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.3.7
2021-09-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
2.3.6
2021-04-02
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-04-02
Total releases: 4 / 5 yrs
License: BSD_3_clause + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 1,011 KB / 7 files
Download size: 2.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Web Technologies and Services

Report a problem with this page →