PRECAST
Embedding and Clustering with Alignment for Spatial Omics Datasets
v1.8
·
Dec 15, 2025
·
GPL-3
Description
An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.
Downloads
357
Last 30 days
9048th
357
Last 90 days
357
Last year
CRAN Check Status
2
ERROR
1
NOTE
11
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | ERROR |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Package required but not available: ‘scater’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
ERROR
r-oldrel-macos-arm64
package dependencies
Package required but not available: ‘scater’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 11.9Mb
sub-directories of 1Mb or more:
data 2.2Mb
libs 8.9Mb
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 11 OK · 1 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Package required but not available: ‘scater’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
ERROR
r-oldrel-macos-arm64
package dependencies
Package required but not available: ‘scater’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 11.9Mb
sub-directories of 1Mb or more:
data 2.2Mb
libs 8.9Mb
Reverse Dependencies (2)
Dependency Network
Version History
new
1.8
Mar 9, 2026