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DR.SC

Joint Dimension Reduction and Spatial Clustering

v3.7 · Dec 14, 2025 · GPL-3

Description

Joint dimension reduction and spatial clustering is conducted for Single-cell RNA sequencing and spatial transcriptomics data, and more details can be referred to Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Yeong, Xiang Zhou, Xingjie Shi and Jin Liu. (2022) <doi:10.1093/nar/gkac219>. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.

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2 NOTE
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is 11.0Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   7.7Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 12.5Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    libs   8.0Mb
OK r-oldrel-windows-x86_64

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OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 11.0Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   7.7Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 12.5Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    libs   8.0Mb

Reverse Dependencies (3)

Dependency Network

Dependencies Reverse dependencies spatstat.geom CompQuadForm irlba cowplot ggplot2 MASS Matrix mclust purrr S4Vectors RColorBrewer Rcpp Seurat PRECAST ProFAST coFAST DR.SC

Version History

new 3.7 Mar 9, 2026