OUwie

3.0.2

Analysis of Evolutionary Rates in an OU Framework

0packages depend

12.4Kdownloads / year

36.6%test coverage

9/13checks pass

Overview

About

Maintained by Jeremy M. BeaulieuFirst published 2011-09-1749 releasesCRAN page ↗GitHub ↗

Estimates rates for continuous character evolution under Brownian motion and Ornstein-Uhlenbeck based Hansen models that allow both the strength of the pull and stochastic motion to vary across selective regimes. Beaulieu et al. (2012).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OUwie", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("thej022214/OUwie")

Development version from thej022214/OUwie. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ouwie

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OUwie

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OUwie

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

4NOTE9OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64

Slowest check: 8.0 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.10

36.6%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-07-16
10 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-05-10
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

WARNING2026-05-09
11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-25
10 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-30
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 25%
Documented parameters: 95%
Return-value docs: 100%
References docs: 50%

Downloads

12.4K

CRAN downloads in the past year

Rank #5,721 · ~34/day · ~1K/mo

Releases R versions

Daily download trend is not available in this view yet.

67530 days

1.7K90 days

12.4K1 year

Compare downloads with other packages →

Also on112 r2u39 autocran97 c2d4u

Repository

GitHub ↗ thej022214/ouwie

10Stars

7Forks

9Open issues

1Open PRs

0Releases

312Commits

17Contributors

312 commits · Last activity 2026-07-14 · 0% stars, 30d

Stars over time

2024-10-19 · 92026-07-07 · 10

Repository practices

Upstream repositoryBeta

Checks run against github.com/thej022214/ouwie on 2026-07-19.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (6)

R >= 3.2.0ape corpcor nloptr geiger RColorBrewer

Imports (18)

igraph numDeriv phytools paleotree phangornstatslhs interpgrDevicesparallelphylolm GenSAMASScorHMM data.table expm ggplot2 reshape2

LinkingTo (0)

none

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 4,499 (80%)Rd 587 (10%)Vignettes 511 (9%)Other 1 (0%)

Code characteristics

Object systems

S36

Cyclomatic complexity: 6.0 median / 164 max
Test cases: 28 / 0.10 per code line

Test coverage

Line coverage

37%

Expression

34.5%

Tests / Examples

36.6% / 0% ex

Functions

56 10 exported

Complexity

11.8 avg / 164 max

Call network

56 nodes / 74 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

56 functions

Function	Cyclo	Coverage
OUwie.boot exp	22	0%
OUwie.contour exp	4	0%
OUwie.dredge exp	7	0%
OUwie.format exp	19	0%
OUwie.sim exp	48	0%
check.identify exp	10	0%

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
trait	data.frame	64 × 3	–

People & History

People (2)

Maintainer (1)

Jeremy M. Beaulieu

Author, Maintainer

Authors (2)

Jeremy M. Beaulieu

Author, Maintainer

Brian O'Meara

Author

Listed in earlier versions (1)

Beaulieu

no longer listed · 3.0.2

Package Timeline

49 releases. Pick two to compare their code metrics. R releases are shown for context.

3.0.2Latest
2026-07-02 · current release · diff ↗
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R 4.6.0 released · 2026-04-24
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R 4.5.0 released · 2025-04-11
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R 4.4.0 released · 2024-04-24
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R 4.3.0 released · 2023-04-21
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unarchivedReturned to CRAN
2022-06-15
archivedRemoved from CRAN
2022-05-26
check problems were not corrected in time
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R 4.2.0 released · 2022-04-22
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R 4.1.0 released · 2021-05-18
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R 4.0.0 released · 2020-04-24
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R 3.0.0 released · 2013-04-03
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R 2.15.0 released · 2012-03-30
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2012-02-19 · diff ↗
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2011-12-19 · diff ↗
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R 2.14.0 released · 2011-10-31
1.2
2011-09-17 · diff ↗
2.13.2
2011-08-19
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-09-17
Total releases: 49 / 15 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.2.0
Bundled data: 4.5 KB / 2 files
Download size: 1.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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