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Eagle

Multiple Locus Association Mapping on a Genome-Wide Scale

v2.5 · Nov 29, 2021 · GPL-3
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Description

An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.

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11 NOTE
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 NOTE
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 NOTE
r-release-macos-arm64 NOTE
r-release-macos-x86_64 NOTE
r-release-windows-x86_64 NOTE
Check details (17 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
OK r-devel-linux-x86_64-fedora-clang

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C++ specification

              
  Specified C++11: please drop specification unless essential

            

          

        

      



      

      
      

        
Check History

        

          

            
              NOTE
              
                3 OK ·                 11 NOTE ·                 0 WARNING ·                 0 ERROR ·                 0 FAILURE              
              Mar 9, 2026
            
            

              

                

                  NOTE
                  r-devel-linux-x86_64-debian-clang
                

                
CRAN incoming feasibility

                
Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

              

              

                

                  NOTE
                  r-devel-linux-x86_64-debian-gcc
                

                
CRAN incoming feasibility

                
Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

              

              

                

                  NOTE
                  r-devel-macos-arm64
                

                
Rd files

                
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ?
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                  NOTE
                  r-devel-windows-x86_64
                

                
C++ specification

                
  Obsolete C++11 standard request will be ignored

              

              

                

                  NOTE
                  r-release-linux-x86_64
                

                
Rd files

                
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ?
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C++ specification

                
  Specified C++11: please drop specification unless essential

              

              

                

                  NOTE
                  r-oldrel-macos-arm64
                

                
installed package size

                
  installed size is 12.7Mb
  sub-directories of 1Mb or more:
    libs       11.3Mb
    shiny_app   1.1Mb

              

              

                

                  NOTE
                  r-oldrel-macos-x86_64
                

                
installed package size

                
  installed size is 12.9Mb
  sub-directories of 1Mb or more:
    libs       11.4Mb
    shiny_app   1.1Mb

              

              

                

                  NOTE
                  r-oldrel-windows-x86_64
                

                
C++ specification

                
  Specified C++11: please drop specification unless essential

              

            

          

        

      


      

      
      

        
Dependency Network

        

          
            

            
            
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            Eagle
          
        

      


      
      

        
Version History

        

          

            new
            2.5
            Mar 9, 2026