DAISIEprep

1.0.1

Extracts Phylogenetic Island Community Data from Phylogenetic Trees

0packages depend

2.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Joshua W. LambertFirst published 2023-04-254 releasesCRAN page ↗GitHub ↗

Extracts colonisation and branching times of island species to be used for analysis in the R package 'DAISIE'. It uses phylogenetic and endemicity data to extract the separate island colonists and store them.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("DAISIEprep", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("joshwlambert/DAISIEprep")

Development version from joshwlambert/DAISIEprep. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-daisieprep

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 7.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 1.43

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 496 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.9K

CRAN downloads in the past year

Rank #14,790 · ~8/day · ~243/mo

Releases R versions

Daily download trend is not available in this view yet.

25230 days

75290 days

2.9K1 year

Compare downloads with other packages →

Also on142 r2u

Repository

GitHub ↗ joshwlambert/daisieprep

6Stars

4Forks

5Open issues

1Open PRs

12Releases

474Commits

5Contributors

phylogeneticsisland-biogeographydata-sciencer

License GPL-3.0 · 474 commits · Last activity 2026-05-15

Stars over time

2023-02-22 · 62026-07-07 · 6

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/joshwlambert/daisieprep on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdrevdep/

Research and citation (1)

Zenodo

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (10)

methodsape phylobase ggplot2 scales ggtree DAISIE castor tibble rlang

LinkingTo (0)

none

Suggests (9)

testthat knitr rmarkdown covr diversitree corHMM tidyr dplyr ggimage

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Joshua W. Lambert

Author, Maintainer

Authors (5)

Author, Maintainer

Author

Author

Author

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.1Latest
2025-10-31 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.0
2024-12-18 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.4.0
2024-04-02 · diff ↗
0.3.2
2023-04-25
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-04-25
Total releases: 4 / 3 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.0
Bundled data: 39 KB / 17 files
Download size: 2.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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