DAISIE

4.6.0

Dynamical Assembly of Islands by Speciation, Immigration and Extinction

2packages depend

3.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Rampal S. EtienneFirst published 2015-05-2113 releasesCRAN page ↗GitHub ↗

Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) doi:10.1111/ele.12461.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("DAISIE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rsetienne/DAISIE")

Development version from rsetienne/DAISIE. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-daisie

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DAISIE

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 29.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.55

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 96%
Documented parameters: 92%
Return-value docs: 98%
References docs: 24%

Downloads

3.6K

CRAN downloads in the past year

Rank #10,674 · ~10/day · ~297/mo

Releases R versions

Daily download trend is not available in this view yet.

34730 days

98590 days

3.6K1 year

Compare downloads with other packages →

Also on488 r2u32 autocran53 c2d4u

Repository

GitHub ↗ rsetienne/daisie

10Stars

11Forks

21Open issues

0Open PRs

24Releases

2,782Commits

19Contributors

License GPL-3.0 · 2,782 commits · Last activity 2026-07-23 · 0% stars, 30d

Stars over time

2023-04-25 · 92026-07-07 · 10

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/rsetienne/daisie on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

Lint, format, editor (1)

RStudio project

Coverage (1)

.covrignore

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

29 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.2.0

Imports (15)

DDD deSolve doParallel foreachgraphicsmagrittrMatrixparallelpracma Rcppstatssubplex tensor testitutils

LinkingTo (3)

Rcpp RcppEigen BH

Suggests (16)

ape covr dplyr future future.apply ggplot2 ggtree (>= 3.0.0)gridExtra knitr phytools purrr rmarkdown testthat tibble tidytree tidyr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

DAISIEprep nLTT

Code & Tests

Datasets

People & History

People (14)

Maintainer (1)

Rampal S. Etienne

Author, Maintainer · added in 1.0.1

Authors (9)

Rampal S. Etienne

Author, Maintainer · added in 1.0.1

Richèl J.C. Bilderbeek

Author · added in 3.0.0

Bart Haegeman

Author · added in 3.0.0

Hanno Hildenbrandt

Author · added in 4.2.0

Joshua W. Lambert

Author · added in 3.0.1

Albert B. Phillimore

Author · added in 3.0.0

Pedro Santos Neves

Author · added in 4.3.1

Luis Valente

Author · added in 3.0.0

Shu Xie

Author · added in 3.0.0

Contributors (5)

Ornela Dehayem Nanwou

Contributor · added in 4.6.0

Torsten Hauffe

Contributor · added in 3.0.0

Nadiah Kristensen

Contributor · added in 3.0.0

Giovanni Laudanno

Contributor · added in 3.0.0

Raphael Scherrer

Contributor · added in 3.0.0

Listed in earlier versions (7)

Rampal S. Etienne & Luis M. Valente

no longer listed · 1.0

Luis M. Valente & Albert B. Phillimore

no longer listed · 1.0.1

Albert B. Phillimore & Bart Haegenan

no longer listed · 1.0.2

Luis M. Valente

no longer listed · 1.0.2 to 1.4

Albert B. Phillimore & Bart Haegeman

no longer listed · 1.2 to 1.4

Joshua Lambert

no longer listed · 3.0.0

Pedro Neves

no longer listed · 3.0.0 to 4.2.0

Package Timeline

13 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
4.6.0Latest
2025-06-01 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
4.5.0
2025-02-05 · diff ↗
R
R 4.4.0 released · 2024-04-24
4.4.1
2023-10-22 · diff ↗
R
R 4.3.0 released · 2023-04-21
4.4.0
2023-04-03 · diff ↗
unarchivedReturned to CRAN
2023-04-03
archivedRemoved from CRAN
2023-03-01
issues were not corrected in time
4.3.1
2023-02-13 · diff ↗
4.2.0
2022-06-02 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
3.0.1
2020-08-26 · diff ↗
3.0.0
2020-08-14 · diff ↗

Show 11 earlier events

R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.4
2017-04-13 · diff ↗
1.2
2016-11-14 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.0.2
2015-09-29 · diff ↗
1.0.1
2015-06-03 · diff ↗
1.0
2015-05-21
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-05-21
Total releases: 13 / 11 yrs
License: GPL (>= 3) | file LICENSE OSI
Minimum R: ≥ 4.2.0
Bundled data: 591 KB / 16 files
Download size: 1.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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