Bioconductor Packages

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

R-side access to BioPlex protein-protein interaction data

Annotations for City of Hope CpG Island Analysis Pipeline

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Chimp and human brain data package

Orchestrating Blood Radiation Transcriptomic Data

Drug versus Disease Data

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Human Functional Interactions (FIs) for splineTimeR package

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Data used in the examples and vignettes of the GWASTools package

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

ITALICSData

Disease Datasets from GEO

KEGG Disease Datasets from GEO

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

M3Drop Example Data

Experimental Data Package: MAQCsubset

Example ChIP-Seq data for the MMDiff package

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Data for the NCIgraph software package

Data required for getting the gene set scores with NetActivity package

Supporting data for package OMICsPCA

Ob/ob Mice Data on Normal and High Fat Diet

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Experimental data for the PathNet package

SELDI-TOF data of Breast cancer samples

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Supporting datasets for SBGNview package

An example dataset for use with the SVM2CRM package

Integrating Multi-modal Single Cell Experiment datasets

Somatic Cancer Alterations

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Data for the VariantTools tutorial

Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC).

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014

Data for testing of the package blima.

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).