Bioconductor Packages

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Data for the NCIgraph software package

Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package

Data required for getting the gene set scores with NetActivity package

expression and CGH data on breast cancer cell lines

Supporting data for package OMICsPCA

Ob/ob Mice Data on Normal and High Fat Diet

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Experimental data for the PathNet package

SELDI-TOF data of Breast cancer samples

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

An RRBS data set with 12 samples and 10,000 simulated DMRs

Standard regression functions in R enabled for parallel processing over large data-frames

RnaSeqSampleSizeData

Supporting datasets for SBGNview package

Sequence data from chromosome 4 of a small-cell lung tumor

An example dataset for use with the SVM2CRM package

Integrating Multi-modal Single Cell Experiment datasets

An example cancer whole genome sequencing data for the SomatiCA package

Somatic Cancer Alterations

Annotated spatial transcriptomics datasets from 10x Xenium, NanoString CosMx and BGI STOmics.

The Cancer Genome Atlas Illumina 450k methylation example data

Data for TCGA Workflow

TCGA CRC 450 mRNA dataset

TCGA CRC 450 miRNA dataset

Experiment data for the TENET package

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

A Collection of DNA Methylation Datasets for Human Tumour Samples and Matching Normal Samples

Data for the VariantTools tutorial

Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC).

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014

Normal colon and cancer preprocessed affy data for antiProfile building.

ARACNe-inferred gene networks from TCGA tumor datasets

Human B-cell transcriptional interactome and normal human B-cell expression data

Bladder gene expression data illustrating batch effects

Data for testing of the package blima.

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Genexpression dataset published by van't Veer et al. [2002] and van de Vijver et al. [2002] (NKI).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Example whole genome bisulfite data for the bsseq package

Connectivity Map (version 2) Data

Development and validation of diagnostic tests from high-dimensional molecular data: Datasets

ExperimentHub data for the cfTools package

exprSet for Alon et al. (1999) colon cancer data