Bioconductor Packages

A data package

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

A Package for CLL Gene Expression Data

Methylation data of primary CLL samples in PACE project

Annotations for City of Hope CpG Island Analysis Pipeline

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

COSMIC.67

CRC cell line dataset

Pre-processed data for use with the CellMapper package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

Helper files for CopywriteR

DNA methylation-based machine learning models

Diffuse large B-cell lymphoma expression data

Data Package for DMRcate

Example DNAm Data for DMRsegal

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Data for the ELMER package

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

Data for the EpiMix package

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

GEO accession data GSE103322 as a SingleCellExperiment

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

T cell line infections with HIV-1 LAI (BRU)

Data for the Harman package

Processed Harmonized TCGA Data of Five Selected Cancer Types

Collection of Bulk RNA-Seq Experiments With Many Replicates

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

LINCS Knock-Out Data Package

Marker gene information for LRcell R Bioconductor package

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

Reads from Two Lung Cancer Cell Lines

M3Drop Example Data

Collection of public MERFISH datasets

Transcriptomic Breast Cancer Datasets