Bioconductor Packages

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Helper files for CopywriteR

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Processed Harmonized TCGA Data of Five Selected Cancer Types

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

Reproduce figures in IHW paper

LegATo: Longitudinal mEtaGenomic Analysis Toolkit

Data package for Multi-Omics Factor Analysis (MOFA)

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Datasets for benchmarking in microbiome research

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Data package for phylogenetic profile analysis using PhyloProfile tool

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Integrating Multi-modal Single Cell Experiment datasets

Collection of spatial omics datasets

Visium spatial gene expression data by 10X Genomics

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

A harmonized data resource and software for enrichment analysis of microbial physiologies

ExperimentHub data for the cfTools package

Curated Metagenomic Data of the Human Microbiome

Curated Prostate Cancer Data

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Cancer Dependency Map Data Package

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Furrow Segmentation

Collection of publicly available imaging mass cytometry (IMC) datasets

Sigma mix MSQC1 data

Single-Cell Proteomics Data Package

Tuberculosis Gene Expression Data for Machine Learning