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Bioconductor Packages

4,656 packages in the Bioconductor catalogue.

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4,656

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3,810

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846

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5

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All (4,656) Software (2,418) Annotation (928) Experiment (436) Workflows (28)

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Showing 1–45 of 45 packages

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Package Status

View AnnotationHub and ExperimentHub Resources Interactively

current

View Bioconductor Package Maintainer Information Interactively

current
CRISPRball Bioc

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

current
ChromSCape Bioc

Analysis of single-cell epigenomics datasets with a Shiny App

current

GUI's for visualization of flow cytometry data analysis pipelines

current

Graphical Exploration of Design Matrices

current

Download datasets from EMBL-EBI Expression Atlas

current
GNOSIS Bioc

Genomics explorer using statistical and survival analysis in R

current
GeDi Bioc

Defining and visualizing the distances between different genesets

current
GeneTonic Bioc

Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

current

MSstats GUI for Statistical Anaylsis of Proteomics Experiments

current

Shiny-based interactive data-quality exploration for omics data

current
MetCirc Bioc

Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data

current
RFLOMICS Bioc

Interactive web application for Omics-data analysis

current
SeqSQC Bioc

A bioconductor package for sample quality check with next generation sequencing data

current
SmartPhos Bioc

A phosphoproteomics data analysis package with an interactive ShinyApp

current
TSAR Bioc

Thermal Shift Analysis in R

current
bettr Bioc

A Better Way To Explore What Is Best

current
carnation Bioc

Interactive Exploration & Management of RNA-Seq Analyses

current
clevRvis Bioc

Visualization Techniques for Clonal Evolution

current
cn.mops Bioc

cn.mops - Mixture of Poissons for CNV detection in NGS data

current
flowcatchR Bioc

Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells

current
gDR Bioc

Umbrella package for R packages in the gDR suite

current
gDRcore Bioc

Processing functions and interface to process and analyze drug dose-response data

current
geyser Bioc

Gene Expression displaYer of SummarizedExperiment in R

current
goatea Bioc

Interactive Exploration of GSEA by the GOAT Method

current
iSEE Bioc

Interactive SummarizedExperiment Explorer

current
iSEEfier Bioc

Streamlining the creation of initial states for starting an iSEE instance

current
iSEEhub Bioc

iSEE for the Bioconductor ExperimentHub

current

iSEE extension for panels related to pathway analysis

current
iSEEtree Bioc

Interactive visualisation for microbiome data

current
ideal Bioc

Interactive Differential Expression AnaLysis

current
igvShiny Bioc

igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

current
imageTCGA Bioc

TCGA Diagnostic Image Database Explorer

current
miaDash Bioc

Dashboard for the interactive analysis and exploration of microbiome data

current
omXplore Bioc

Vizualization tools for 'omics' datasets with R

current

Interactive Visualization of RNA-seq Data Using a Principal Components Approach

current
rawDiag Bioc

Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

current
scafari Bioc

Analysis of scDNA-seq data

current
scanMiRApp Bioc

scanMiR shiny application

current

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny

current
shinyDSP Bioc

A Shiny App For Visualizing Nanostring GeoMx DSP Data

current
squallms Bioc

Speedy quality assurance via lasso labeling for LC-MS data

current

systemPipeR: A Multipurpose Workflow Management System for Reproducible Data Analysis

current

systemPipeShiny: An Interactive Framework for Workflow Management and Visualization

current