Bioconductor Packages

SELDI-TOF data of Breast cancer samples

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Supporting datasets for SBGNview package

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

An example dataset for use with the SVM2CRM package

Integrating Multi-modal Single Cell Experiment datasets

Somatic Cancer Alterations

Collection of spatial omics datasets

Visium spatial gene expression data by 10X Genomics

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Data for the VariantTools tutorial

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC).

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014

Example experimental microarray data set for the "biotmle" R package

Data for testing of the package blima.

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

A harmonized data resource and software for enrichment analysis of microbial physiologies

Connectivity Map (version 2) Data

ExperimentHub data for the cfTools package

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Curated breast cancer gene expression data with survival and treatment information

Curated Metagenomic Data of the Human Microbiome

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Cancer Dependency Map Data Package

Example data for the dyebias package, which implements the GASSCO method.

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

Illumina DASL example microarray data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Furrow Segmentation

Auxillary data for gage package

Experimental data for showing functionalities of the genomation package

Synthetic Expression Data for Gene Regulatory Network Inference

Sample data - Hapmap 100K HIND Affymetrix

Sample data - Hapmap 100K XBA Affymetrix