Bioconductor Packages

Averaged gene expression in human brain regions from Allen Brain Atlas

CytoBands for AnnotationHub

EnsDbs for AnnotationHub

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

Analysis of alternative poly A site usage

A toolkit for APA analysis using RNA-seq data

Example dataset for normalization of Illumina 450k Methylation data

Automatic Statistical Identification in Complex Spectra

Attribute-Weighted Aggregation Data

Affymetrix GeneChip software compatibility

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Investigates Allele Specific Expression

Automated spectraL Processing System for NMR

Create an ALTREP object by defining ALTREP functions in R

Example of Amplified Data

Bioconductor on the AnVIL compute environment

R / Bioconductor Support for the AnVIL Azure Platform

Generic functions for interacting with the AnVIL ecosystem

Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).

The GCP R Client for the AnVIL

Publish Packages and Other Resources to AnVIL Workspaces

Expose the vrs_anvil_toolkit Python package via R

Run workflows implemented in Terra/AnVIL workspace

A framework for sharing interactive data and plots from R through the web

WGSCS Data for Demonstration Purposes

100+ Curated Breast Cancer Gene Expression Data sets

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Data and Files for the AssessORF Package

Gene Expression Atlas query and gene set enrichment package.

Tools for the Efficient Analysis of High-Resolution Genomics Data

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

Bioconductor-Friendly Multithreaded BAM Processing

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Analysing Illumina BeadArray expression data using Bioconductor

Illumina EPIC data on BeadSorted child saliva cells