Bioconductor Packages

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

plot bayesian network inferred from gene expression data based on enrichment analysis results

CTDPathSim: Cell line-tumor deconvoluted pathway-based similarity in the context of precision medicine in cancer

Defining and visualizing the distances between different genesets

R Interface with InterMine-Powered Databases

Mean Log P Analysis

Multi Omics Survival Clip

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

Integrating Multi-Omic Network Data With Summay-Level GWAS Data

PoTRA: Pathways of Topological Rank Analysis

Random walk with restart on multiplex and heterogeneous Networks

Interface for the Reactome Content Service

Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

Interface for the Reactome Graph Database

Reactome Pathway Analysis

Investigating regions of interest and performing regional cell type-specific analysis with spatial transcriptomics data

SigFun

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

Interactive Multi-Omics Cancers Data Visualization and Analysis

A Universal Enrichment Tool for Interpreting Omics Data

Functional analysis of metabolic and transcriptomic data

Fast functional enrichment for interactive applications

Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

GRAPH Interaction from pathway Topological Environment

Multi-Contrast Gene Set Enrichment Analysis

Study of mitochondrial activity from RNA-seq data

mulea - an R package for enrichment analysis using multiple ontologies and empirical FDR correction

Combining GSEA-based pathway enrichment with multi omics data integration

Analyze and interpret RNA-Seq results

Pathway fingerprinting for analysis of gene expression arrays

Access Pathways from Multiple Databases Through BioPAX and Pathway Commons

scGraphVerse: A Gene Network Analysis Package

Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data

Translational Efficiency Regulation Analysis using the PADOG Method