Bioconductor Packages

Accessing AlphaMissense Data Resources in R

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Tools for curating, analyzing, and manipulating biological sequences

Damsel: an end to end analysis of DamID

Extending guilt by association by degree

Host-Pathogen Interaction Prediction

Predicting Targets for Drosophila Intragenic miRNAs

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

In-silico methods for genetic finemapping in inbred mice

Pancreatic Ductal Adenocarcinoma Tool-Kit

PhenoGeneRanker: A gene and phenotype prioritization tool

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

A reweighted Lasso-Cox by integrating gene interaction information

Surface Protein Prediction and Identification

Package for prediction of zygosity for variants/genes in NGS data

Analysis of SUrvival and RIsk prediction in patients based on gene signatures

circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Codon Usage Analysis and Prediction of Gene Expressivity

Functional Annotation of Custom Transcriptomes

Identification of candidate genes associated with genetic variation

Integrates DNA methylation data with gene expression in a single gene network

Omics Data Integration Project

Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection

Identification of domain isotypes in pfam data

Pooling RNA-seq datasets for assembling transcript models

sigFeature: Significant feature selection using SVM-RFE & t-statistic

Time-Course Multi-Omics data integration