Bioconductor Packages

ARACNe-inferred gene networks from TCGA tumor datasets

Human B-cell transcriptional interactome and normal human B-cell expression data

Bladder gene expression data illustrating batch effects

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Genexpression dataset published by van't Veer et al. [2002] and van de Vijver et al. [2002] (NKI).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Example whole genome bisulfite data for the bsseq package

Development and validation of diagnostic tests from high-dimensional molecular data: Datasets

ExperimentHub data for the cfTools package

exprSet for Alon et al. (1999) colon cancer data

Bladder Cancer Gene Expression Analysis

Curated breast cancer gene expression data with survival and treatment information

Colorectal Cancer Gene Expression Analysis

Clinically Annotated Data for the Ovarian Cancer Transcriptome

Curated Prostate Cancer Data

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Cancer Dependency Map Data Package

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Data sets for FABIA (Factor Analysis for Bicluster Acquisition)

Auxillary data for gage package

exprSets for golub leukemia data

Synthetic Expression Data for Gene Regulatory Network Inference

Example data for the h5vc package

Sample data - Hapmap 100K HIND Affymetrix

Sample data - Hapmap 100K XBA Affymetrix

Sample data - Hapmap 500K NSP Affymetrix

Sample data - Hapmap 500K STY Affymetrix

Sample data - Hapmap SNP 5.0 Affymetrix

DKFZ kidney package

Leukemia's microarray gene expression data (expressionSet).

ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paper

RGLists from the Glas and Buyse breast cancer studies

Sample Expression Data - MAQC / HG18 - NimbleGen

SummarizedExperiment for the microRNAome project

Open Cancer TherApeutic Discovery (OCTAD) database

Prostate Cancer Data

Prostate Cancer Data

Prostate Cancer Data

Prostate Cancer Data

Prostate Cancer Data

rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

ExpressionSets from the van't Veer and Van de Vijver breast cancer studies

Example dataset of input data for shinyMethyl

Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)

systemPipeRdata: Workflow templates and sample data

VirtUaL ChIP-Seq data Analysis using Networks, dummy dataset

Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data