Bioconductor Packages

Data for NxtIRF

Supporting data for package OMICsPCA

Ob/ob Mice Data on Normal and High Fat Diet

Promoter Capture Hi-C data

expression and copy number data on clear cell renal carcinoma samples

H. sapiens background for PWMEnrich

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

SELDI-TOF data of Breast cancer samples

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Test dataset for RMassBank

Example data for the RNAmodR package

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

An RRBS data set with 12 samples and 10,000 simulated DMRs

Gender data for the RUVnormalize package

Companion data package for the ReactomeGSA package

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

RnaSeqSampleSizeData

Supporting datasets for SBGNview package

Sequence data from chromosome 4 of a small-cell lung tumor

Example SpatialFeatureExperiment datasets

SNAGEE data

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

An example dataset for use with the SVM2CRM package

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Integrating Multi-modal Single Cell Experiment datasets

Data supporting the SingleMoleculeFootprinting pkg

An example cancer whole genome sequencing data for the SomatiCA package

Collection of spatial omics datasets

Affymetrix Spike-In Experiment Data

Part of Affymetrix's Spike-In Experiment Data

Annotated spatial transcriptomics datasets from 10x Xenium, NanoString CosMx and BGI STOmics.

Subset of BAM files from the "TBX20" experiment

The Cancer Genome Atlas Illumina 450k methylation example data

Data for TCGA Workflow

Data for the TCGAbiolinksGUI package

Experiment data for the TENET package

Single cell dataset from 10x in BUS format

Data from the 10X 1.3 Million Brain Cell Study

PBMC data from 10X Genomics

Collection of Xenium spatial data by 10X genomics

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

10x And SmartSeq2 Data From The Tabula Muris Consortium

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

TargetScoreData

Timer Quantification

A collection of trans-omics datasets across various biological systems

A Collection of DNA Methylation Datasets for Human Tumour Samples and Matching Normal Samples

Data for the VariantTools tutorial

Vectra Polaris and Vectra 3 multiplex single-cell imaging data