Bioconductor Packages

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Companion data package for the ReactomeGSA package

Example SpatialFeatureExperiment datasets

An example dataset for use with the SVM2CRM package

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

An example cancer whole genome sequencing data for the SomatiCA package

Somatic Cancer Alterations

The Cancer Genome Atlas Illumina 450k methylation example data

Experiment data for the TENET package

Timer Quantification

A collection of trans-omics datasets across various biological systems

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

EBI/PSB cross-hybridisation study package

Affymetrix Data for Demonstration Purpose

Normal colon and cancer preprocessed affy data for antiProfile building.

ARACNe-inferred gene networks from TCGA tumor datasets

Human B-cell transcriptional interactome and normal human B-cell expression data

Example experimental microarray data set for the "biotmle" R package

Data Package for Biscuiteer

Strand-seq data for demonstration purposes

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Example whole genome bisulfite data for the bsseq package

ExperimentHub data for the cfTools package

Companion package to chipenrich

Data used in the vignette of the cnvGSA package

exprSet for Alon et al. (1999) colon cancer data

Curated breast cancer gene expression data with survival and treatment information

Curated Prostate Cancer Data

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Cancer Dependency Map Data Package

Datasets for R Package dominatR

data and software for checking Dressman JCO 25(5) 2007

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

The ewceData package provides reference data required for ewce

Illumina DASL example microarray data

exprSet for Karaman et al. (2003) fibroblasts data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Furrow Segmentation

Auxillary data for gage package

ExpressionSet for response of yeast to heat shock and other environmental stresses

Lengths of mRNA transcripts for a number of genomes

Experimental data for showing functionalities of the genomation package

exprSets for golub leukemia data

Synthetic Expression Data for Gene Regulatory Network Inference

CellScore Standard Cell Types Expression Dataset [hgu133plus2]

A data package containing annotation data for hgu2beta7