Bioconductor Packages

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

R-side access to BioPlex protein-protein interaction data

Annotations for City of Hope CpG Island Analysis Pipeline

Pre-processed data for use with the CellMapper package

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Chimp and human brain data package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Data Package for DMRcate

Example DNAm Data for DMRsegal

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Drug versus Disease Data

Data for the ELMER package

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Data for the EpiMix package

Human Functional Interactions (FIs) for splineTimeR package

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

Data for the Harman package

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Collection of Bulk RNA-Seq Experiments With Many Replicates

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

ITALICSData

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

Data package for JASPAR 2016

Disease Datasets from GEO

KEGG Disease Datasets from GEO

LINCS Knock-Out Data Package

Marker gene information for LRcell R Bioconductor package

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

M3Drop Example Data

Experimental Data Package: MAQCsubset